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Welcome to "The Hordeum Toolbox" (THT).
"The Hordeum Toolbox" (THT) is the webportal for the data generated by the Barley Coordinated Agricultural Project (CAP) is funded by the Cooperative State Research, Education, and Extension Service (CSREES) of the United States Department of Agriculture (USDA). THT contains SNP, pedigree, and phenotypic data from breeding germplasm in the Barley CAP. As a community resource, THT will integrate rapidly expanding SNP data sets with traditional phenotypic data, structural genomics, and gene expression profile data sets available from PLEXdb. The underlying premise is that these molecular level phenotypes manifest as traits that plant breeders select for.
| Search Type | Example Search Term |
|---|---|
| Search By Plant Line: |
Morex (to return pedigree and trait data for the plant line Morex) |
| Search By SNP Haplotype: |
ABC (note that multiple SNPs are separated by spaces) |
| Search By Breeding Program |
Select a program from the list to see all the Barley lines for that program. If the breeding program has a reference line on file, you can compare your results with the reference line. |
| Search By Dataset |
Select a program from the list to see all the Barley lines for that dataset. If the dataset has a reference line on file, you can compare your results with the reference line. |
| Browse Line Records: |
This will return every Barley line which you can narrow by selecting traits. |
Data Access Policy
All data on THT will be made public within six months of release by the THT curators. During the six month period, the data will only be available to members of the Barley CAP Team unless explicitly released by the data creators.
