Table Admin

Genes targeted for Metabolomics Analysis

Follow the links to find information concerning the Arabidopsis Genes targeted for analysis by this consortium. The genes targeted for analysis fall into two categories:

(1)Genes with partially known biochemical functionality Expand   Download List  

(2)Genes with Unknown biochemical functionality Gene Selection Procedure   Compress  Download List 


(a)Gene predictions from sequence analysis

Locus NameABRC Order NumberEC
AT1G49820 SALK_133954C2.7.1.100
AT1G22430 SALK_022584C1.1.1.2
AT1G10310 SALK_125505C1.1.1.178 1.1.1.35
AT5G61510 SALK_032894C1.3.1.10
AT1G71697 SALK_105337c2.7.1.82
AT1G17160 SALK_137479c2.7.1.45
AT1G12880 SALK_011304c3.6.1.22
AT2G27490 SALK_143417c2.7.1.24

(b)Gene predictions from association network developed in collaboration with Insuk Lee and Ed Marcotte Link

Locus NameABRC Order NumberEC
AT3G52200 SALK_014788cβ-alanine biosynthesis II
AT1G72040 SALK_011420c(deoxy)ribose phosphate degradation
AT2G14680 SALK_028872canthocyanin biosynthesis
AT2G03510 SALK_121515carginine degradation I
AT2G20270 SALK_121961cascorbate glutathione cycle
AT2G26140 SALK_081069ccarbon monoxide dehydrogenase pathway
AT4G39040 SALK_036405ccarbon monoxide dehydrogenase pathway
AT1G71720 SALK_107226cchorismate biosynthesis
AT5G37930 SALK_112932cchorismate biosynthesis
AT2G05170 SALK_085941ccoenzyme A biosynthesis
AT2G06510 SALK_066577ccoenzyme A biosynthesis
AT2G39670 SALK_022971cde novo biosynthesis of pyrimidine ribonucleotides
AT3G19630 SALK_112040cde novo biosynthesis of pyrimidine ribonucleotides
AT5G38460 SALK_130472cdolichyl-diphosphooligosaccharide biosynthesis
AT4G39520 SALK_130673cfatty acid elongation -- saturated
AT4G10030 SALK_090222cflavonoid biosynthesis
AT2G38710 SALK_019795cglutamate degradation II
AT5G53580 SALK_064795cglycine degradation
AT1G04620 SALK_018790cglycine degradation
AT5G08120 SALK_090101cglycine degradation
AT5G66550 SALK_025686cisopentenyl diphosphate biosynthesis -- mevalonate-independent
AT4G18370 SALK_099162cisopentenyl diphosphate biosynthesis -- mevalonate-independent
AT1G58030 SALK_097354cjasmonic acid biosynthesis
AT3G52750 SALK_151779clipid-A-precursor biosynthesis
AT1G79520 SALK_102733cmannitol degradation
AT2G46180 SALK_014489cmannitol degradation
AT1G68900 SALK_039309cmenaquinone biosynthesis
AT5G57490 SALK_039244cNAD/NADH phosphorylation and dephosphorylation
AT1G05140 SALK_071288cphospholipid biosynthesis
AT1G61770 SALK_016228cpolyamine biosynthesis III
AT4G08350 SALK_126891cpurine degradation
AT1G68540 SALK_129453cpyridine nucleotide cycling
AT3G17040 SALK_079285cpyridine nucleotide cycling
AT3G49310 SALK_062081cstarch biosynthesis
AT2G32720 SALK_009185csuberin biosynthesis
AT3G47060 SALK_025202ctetrahydrofolate biosynthesis II
AT4G14070 SALK_139663cthiamin biosynthesis
AT1G35710 SALK_067463ctriacylglycerol degradation
AT2G35020 SALK_090658ctyrosine biosynthesis II
AT4G37470 SALK_128254ctyrosine degradation
AT4G39960 SALK_065859cUDP-N-acetyl-D-glucosamine biosynthesis
AT5G43380 SALK_093747cureide biosynthesis
AT1G60230 SALK_126003C de novo biosynthesis of pyrimidine ribonucleotides
AT2G47470 SALK_135268C phylloquinone biosynthesis
AT3G12080 CS24090 de novo biosynthesis of pyrimidine ribonucleotides
AT4G14930 SALK_016312C leucine degradation
AT4G22890 SALK_024747c, SALK_133856c (bot in promoter regionphotorespiration
AT5G20080 SALK_114456csucrose degradation
AT1G50460 SALK_013989csucrose degradation
AT2G19830 CS800050anthocyanin biosynthesis
AT3G54960 SALK_148208cphylloquinone biosynthesis
AT4G11100 SALK_062847cbiosynthesis of proto- and siroheme
AT5G61790 SALK_083600cphylloquinone biosynthesis
AT1G31160 SALK_042175cglycolysis I
AT3G12760 SALK_077749cde novo biosynthesis of purine nucleotides II
AT1G19110 SALK_021832c (first exon), SALK_027450c (exons 3-5starch degradation
AT1G03350 SALK_035330cthreonine degradation

(3)Genes Profiled By this ConsortiumExpand