Software tools

PubMed Assistant
PubMed Assistant is a stand-alone Java™ program that helps biologists and medical workers get the most out of PubMed search.

exploRase
exploRase is a MetNet tool written in R for the exploratory multivariate analysis of Systems Biology data. It provides a graphical user interface (GUI) on top of the analysis functionality provided by R and the Bioconductor project. ExploRase is designed to be accessible to biologists analyzing omics data in the context of metabolic and regulatory networks.

MetaOmGraph
MetaOmGraph is a tool for plotting and analyzing large sets of data while using as little memory as possible

PathBinderAt
PathBinderAt is a unique, plant-based tool to explore the literature, and to annotate metabolic and regulatory interactions and biomolecules. PathBinderAt queries the MEDLINE database and retrieves sentences containing two terms of interest; each sentence is a clickable link pointing to the original on-line PubMed citation.